Datasets
The Discovery Lab data catalog lists gynecologic cancer datasets hosted in OCRA's Trusted Research Environment alongside public resources from around the world. Filter by data type, cancer type or access level, then open a dataset for its summary, contributors, citations and how to request access.
- Atlas
Single-cell sequencing of normal fallopian tube epithelial cells
Smart-seq2 of 1,857 cells from 5 donors: 1,195 secretory, 520 ciliated.
View dataset - Atlas
αKG-mediated carnitine synthesis drives DNA repair via histone acetylation
CRISPR screen, RNA-seq and histone proteomics in FT282 and Ovcar8 cell lines.
View dataset - External
Australian National Gynae-Oncology Registry (NGOR)
Diagnosis, treatment and outcome data for ovarian, tubal and peritoneal cancer.
View dataset - TRE
Cellular heterogeneity of human fallopian tubes in normal and hydrosalpinx disease states
10x scRNA-seq of healthy premenopausal and hydrosalpinx fallopian tubes.
View dataset - Atlas
MSK SPECTRUM - High-Grade Serous Ovarian Cancer Multimodal Atlas
Genomic, single-cell, spatial and tissue imaging data from untreated HGSOC.
View dataset - Atlas
MSK-IMPACT Endometrial Cancer
Targeted tumor sequencing with MSI status and actionable mutation calls.
View dataset - Atlas
Ovarian Serous Cystadenocarcinoma (TCGA, PanCancer Atlas)
Mutation, copy-number and clinical data for 585 tumors from 585 patients.
View dataset - Atlas
Uterine Carcinosarcoma (Johns Hopkins, Nat Commun 2014)
Tumor-normal exome sequencing of 22 carcinosarcomas: 17 uterine, 5 ovarian.
View dataset - Atlas
Circulating Tumor DNA in Endometrial Cancer
Interactive charts of tumor mutations and clinical data from 44 patients.
View dataset - Atlas
CPTAC Uterine Corpus Endometrial Carcinoma - Discovery Study
Proteome, acetylome and RNA-seq data from 138 tumors and 20 normal tissues.
View dataset - TRE
Human Ovary Single-Cell Atlas
GeoMx spatial (257 ROIs) and scRNA-seq (21,198 cells), 5 premenopausal donors.
View dataset - Atlas
Low-Grade Serous Ovarian Cancer - MAPK pathway
Targeted sequencing and clinical data for 119 LGSOC samples profiled at MSK.
View dataset - Atlas
Metastatic Endometrial Cancer - HER2/ERBB2 cohort
69 samples profiled for ERBB2 mutation, HER2 expression and MSI/POLE status.
View dataset - Atlas
Mismatch Repair Deficient Endometrial Cancer
Genomic and clinical data contrasting mutational and epigenetic MMRd at MSK.
View dataset - Atlas
MSK Endometrial Cancer Ancestry Cohort
MSK-IMPACT sequencing of 1,882 endometrial cancers with race and outcome data.
View dataset - TRE
A single-cell atlas of the aging mouse ovary (Isola et al. 2024, Nature Aging)
scRNA-seq of ovaries from 3- and 9-month-old mice, ~14,000 cells, 4 per group.
View dataset - Atlas
A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC
Paired scRNA- and ATAC-seq resolving 11 fallopian tube and 6 ovary cell types.
View dataset - External
AACR Project GENIE
Registry linking targeted tumor sequencing to outcomes across 20 cancer centers.
View dataset - External
AnVIL - NHGRI Analysis, Visualization, and Informatics Lab-Space
Cloud platform to analyze NIH genomic data in place; over 600,000 samples.
View dataset - External
AOCR Biobank (Netherlands)
Ovarian cancer biobank: 1,339 tissue, 2,280 blood samples from 1,093 patients.
View dataset - External
AOCS - Australian Ovarian Cancer Study
Tumor, blood and clinical data: 1,834 ovarian cancer cases, 1,066 controls.
View dataset - External
ArrayExpress / BioStudies (EMBL-EBI)
Open archive of microarray and single-cell data, including gyne cancer studies.
View dataset - External
Bassiouni et al. 2026 - Ovarian Cancer Single-Cell WGS + Spatial Transcriptomics
Per-cell copy number and spatial expression in 5 untreated HGSOC and CCOC cases.
View dataset - External
C-CAT Database (Japan)
National gene panel and clinical outcome data on ~60,000 solid tumor patients.
View dataset