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Study dataset

A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC

Paired scRNA- and ATAC-seq resolving 11 fallopian tube and 6 ovary cell types.

Listed Apr 24, 2026

  • Single-cell
  • Transcriptomic
  • Epigenomic

Overview

The atlas, part of the Human Cell Atlas initiative, maps the "cancer-ready" postmenopausal microenvironment, where FT epithelial cells express high levels of ovarian cancer risk-associated genes (CCDC170, RND3, TACC2).

A molecular atlas of the human postmenopausal fallopian tube (FT) and ovary, established via single-cell RNA and ATAC-seq, identified 11 distinct cell types in the FT and 6 in the ovary, dominated by stromal cells. The atlas, part of the Human Cell Atlas initiative, maps the "cancer-ready" postmenopausal microenvironment, where FT epithelial cells express high levels of ovarian cancer risk-associated genes (CCDC170, RND3, TACC2).

Key Findings of the Postmenopausal Atlas:

  • Cellular Composition: The fallopian tube consists of 11 major cell types (including ciliated/secretory cells), while the ovary is mostly composed of stromal cells.
  • Tissue Dominance: Stromal cells are the dominant cell type in both tissues, exhibiting high expression of aging-associated genes.
  • Cancer Risk Mapping: Epithelial cells in the fallopian tube (specifically the fimbriae) express genes associated with high-grade serous ovarian cancer.
  • Functional Differences: The fimbrial end of the FT displays high immune activity and strong communication with the ovary, while the regulatory landscape of the fimbriae differs from the isthmus and ampulla.
  • Regulatory Changes: Paired single-cell RNA and ATAC-seq revealed that many FT cell types maintain similar gene expression despite having different chromatin accessibility and transcription regulation.
  • Implications: The studies suggest that postmenopausal tissues undergo significant molecular remodeling toward a "cancer-ready" state, aiding research into gynecological disease prevention.

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Investigators