Investigator

Lidia Moyano-Galceran

Karolinska Institutet

LMLidia Moyano-Galc…
Papers(6)
Adaptive NK Cells Exh…Protocol for generati…Efficacy and Safety o…Adaptive RSK‐EphA2‐GP…Mesothelin-Specific C…Single-cell transcrip…
Collaborators(10)
Kaisa LehtiOkan GultekinSahar SalehiJoseph CarlsonPäivi M. OjalaRamanuj DasguptaShi Yong NeoShruti KhareSirpa LeppäTanja Ruokoranta
Institutions(6)
Karolinska InstitutetKarolinska University…University of HelsinkiAgency for Science, T…Singapore Immunology …University of Helsinki

Papers

Single-cell transcriptomes identify patient-tailored therapies for selective co-inhibition of cancer clones

Abstract Intratumoral cellular heterogeneity necessitates multi-targeting therapies for improved clinical benefits in advanced malignancies. However, systematic identification of patient-specific treatments that selectively co-inhibit cancerous cell populations poses a combinatorial challenge, since the number of possible drug-dose combinations vastly exceeds what could be tested in patient cells. Here, we describe a machine learning approach, scTherapy, which leverages single-cell transcriptomic profiles to prioritize multi-targeting treatment options for individual patients with hematological cancers or solid tumors. Patient-specific treatments reveal a wide spectrum of co-inhibitors of multiple biological pathways predicted for primary cells from heterogenous cohorts of patients with acute myeloid leukemia and high-grade serous ovarian carcinoma, each with unique resistance patterns and synergy mechanisms. Experimental validations confirm that 96% of the multi-targeting treatments exhibit selective efficacy or synergy, and 83% demonstrate low toxicity to normal cells, highlighting their potential for therapeutic efficacy and safety. In a pan-cancer analysis across five cancer types, 25% of the predicted treatments are shared among the patients of the same tumor type, while 19% of the treatments are patient-specific. Our approach provides a widely-applicable strategy to identify personalized treatment regimens that selectively co-inhibit malignant cells and avoid inhibition of non-cancerous cells, thereby increasing their likelihood for clinical success.

6Papers
42Collaborators
Ovarian NeoplasmsCell Line, TumorTumor MicroenvironmentDrug Resistance, NeoplasmApoptosisXenograft Model Antitumor AssaysNeoplasmsLeukemia, Myeloid, Acute