An Integrated Approach to Protein Discovery and Detection From Complex Biofluids

· 2023-06-09

Ovarian cancer, a leading cause of cancer-related deaths among women, has been notoriously difficult to screen for and diagnose early, as early detection significantly improves survival. Researchers and clinicians seek routinely usable and noninvasive screening methods; however, available methods (i.e., biomarker screening) lack desirable sensitivity/specificity. The most fatal form, high-grade serous ovarian cancer, often originate in the fallopian tube; therefore, sampling from the vaginal environment provides more proximal sources for tumor detection. To address these shortcomings and leverage proximal sampling, we developed an untargeted mass spectrometry microprotein profiling method and identified cystatin A, which was validated in an animal model. To overcome the limits of detection inherent to mass spectrometry, we demonstrated that cystatin A is present at 100 pM concentrations using a label-free microtoroid resonator and translated our workflow to patient-derived clinical samples, highlighting the potential utility of early stage detection where biomarker levels would be low.
Funding

NCI NIH HHS

R01 CA260132

NCCIH NIH HHS

T32 AT007533

NIGMS NIH HHS

P20 GM130423

NIGMS NIH HHS

R35 GM137988

NCI NIH HHS

P30 CA168524

NCI NIH HHS

R01 CA240423

National Center for Complementary and Integrative Health

T32AT007533

National Institute of General Medical Sciences

Research Corporation for Science Advancement

26222

Flinn Foundation

Research Corporation for Science Advancement

Foundation for Women's Cancer

Florida Fish and Wildlife Conservation Commission

National Cancer Institute

KUCC CCSG - P30 CA168524

National Cancer Institute

R01CA240423

NIH

P20 GM130423

NIH

R35GM137988