Selective Alanine Transporter Utilization Is a Therapeutic Vulnerability in ARID1A-Mutant Ovarian Cancer

Hao Nie & Rugang Zhang et al.

Abstract

Subunits of the SWI/SNF chromatin remodeling complex are altered in ∼20% of human cancers. Exemplifying the alterations is the ARID1A mutation that occurs in ∼50% of ovarian clear-cell carcinoma (OCCC), a disease with limited therapeutic options. In this study, we showed that ARID1A mutations create a dependence on alanine by regulating alanine transporters to increase intracellular alanine levels. ARID1A directly repressed the alanine importer SLC38A2 and simultaneously promoted the alanine exporter SLC7A8. ARID1A inactivation increased alanine utilization predominantly in protein synthesis and passively through the tricarboxylic acid cycle. Indeed, ARID1A-mutant OCCCs were hypersensitive to the inhibition of SLC38A2. In addition, SLC38A2 inhibition enhanced chimeric antigen receptor T-cell assault in vitro and synergized with immune checkpoint blockade using an anti–PD-L1 antibody in a genetically engineered mouse model of OCCC driven by conditional Arid1a inactivation in a CD8+ T-cell–dependent manner. These findings suggest that targeting alanine transport alone or in combination with immunotherapy may represent an effective therapeutic strategy for ARID1A-mutant cancers.

Significance:

ARID1A mutations regulate expression of alanine transporters to control alanine distribution between cancer cells and the associated tumor microenvironment, which may be exploited therapeutically alone or in combination with immunotherapy.

Funding
Cancer Center Support GrantSignaling basis of senescence-associated secretory phenotype and its implications in epithelial ovarian cancerCore 1: Pathology CorePurchase of a Q Exactive HF mass spectrometer system for metabolomicsAnimal Shared ResourceProject 3: Investigating new treatment approaches based on DNA repair vulnerability in ARID1A mutated type I ovarian cancerMechanistic basis and therapeutic strategies for ARID1A mutation in ovarian cancerRegulation of tumor recurrence by stress activated neutrophilsTargeting EZH2 in CARM1-expressing epithelial ovarian cancerSynthetic lethality based combination approaches to ARID1A mutation in ovarian cancerDevelopment of the MasSpec Pen Technology to Guide Surgical Decisions in the Care for Patients with Ovarian CancerGeneral Clinical Research CenterMetabolic basis of ARID1A-mutated ovarian cancerDevelopmental Research ProgramNCI NIH HHS Grant L30 CA123720Targeting EZH2 in CARM1-expressing epithelial ovarian cancerMechanistic basis and therapeutic strategies for ARID1A mutation in ovarian cancerSynthetic lethality based combination approaches to ARID1A mutation in ovarian cancerRegulation of tumor recurrence by stress activated neutrophilsMetabolic basis of ARID1A-mutated ovarian cancerSignaling basis of senescence-associated secretory phenotype and its implications in epithelial ovarian cancerDevelopmental Research ProgramProject 3: Investigating new treatment approaches based on DNA repair vulnerability in ARID1A mutated type I ovarian cancerCongressionally Directed Medical Research Programs Grant OC190181Congressionally Directed Medical Research Programs Grant OC210124Cancer Prevention and Research Institute of Texas Grant RR230005Ovarian Cancer Research Alliance (OCRA) Grant Mentored InvestigatorCancer Center Support GrantAnimal Shared ResourcePurchase of a Q Exactive HF mass spectrometer system for metabolomicsCancer Prevention and Research Institute of Texas (CPRIT) Grant RP190617

NCI NIH HHS

P30 CA016672

NCI NIH HHS

R01 CA276569

NCI NIH HHS

P50 CA217685

NIH HHS

S10 OD023586

NCI NIH HHS

P30 CA010815

NCI NIH HHS

P50 CA228991

NCI NIH HHS

R01 CA202919

NCI NIH HHS

R01 CA243142

NCI NIH HHS

R01 CA163377

NCI NIH HHS

R01 CA239128

NCI NIH HHS

R01 CA306089

NCRR NIH HHS

M01 RR000847

NCI NIH HHS

R01 CA260661

NCI NIH HHS

P50 CA281701

National Institutes of Health (NIH)

R01CA163377

National Institutes of Health (NIH)

R01CA202919

National Institutes of Health (NIH)

R01CA239128

National Institutes of Health (NIH)

R01CA243142

National Institutes of Health (NIH)

R01CA260661

National Institutes of Health (NIH)

R01CA276569

National Institutes of Health (NIH)

P50CA281701

National Institutes of Health (NIH)

P50CA228991

National Institutes of Health (NIH)

P30CA016672

National Institutes of Health (NIH)

P30CA010815

National Institutes of Health (NIH)

S10OD023586

National Institutes of Health

R01CA163377

National Institutes of Health

R01CA202919

National Institutes of Health

R01CA239128

National Institutes of Health

R01CA243142

National Institutes of Health

R01CA260661

National Institutes of Health

R01CA276569

National Institutes of Health

P50CA281701

National Institutes of Health

P50CA228991

National Institutes of Health

P30CA016672

National Institutes of Health

P30CA010815

National Institutes of Health

S10OD023586