Investigator

Udai Banerji

Co-Director DDU and Professor of Molecular Cancer Pharmacology · The Institute of Cancer Research and The Royal Marsden NHS Foundation Trust, Drug Development Unit

Research Interests

UBUdai Banerji
Papers(2)
Exploiting the folate…Proteomic Landscapes …
Collaborators(3)
Alvaro Ingles R. Garc…Elena CojocaruTheodoros I. Roumelio…
Institutions(2)
Institute Of Cancer R…Institute of Cancer R…

Papers

Proteomic Landscapes of 3D and 2D Models of High-Grade Serous Ovarian Carcinoma: Implications for Carboplatin Response

High-grade serous ovarian carcinoma (HGSOC) is the most common form of ovarian cancer, and finding new treatments remains an unmet need. While drug discovery is typically performed in two-dimensional (2D) monolayers, three-dimensional (3D) culture systems better mimic the in vivo conditions. However, a comprehensive comparison of 3D versus 2D ovarian cancer models is lacking. Here, we quantitatively compared the whole cell proteomic signatures of four ovarian cell lines─PEO1, PEO4, UWB1.289, and UWB1.289+BRCA1─with different status of BRCA genes grown in 2D and 3D. Using isobaric labeling proteomics, we quantified 6404 proteins and identified 371 significantly and commonly altered proteins between 2D and 3D. Proteins upregulated in 3D were enriched for transmembrane transport and NADH:ubiquinone oxidoreductase complex I, while energy metabolism and cell growth pathways also showed dimensionality-dependent changes. Notably, membrane-associated proteins were downregulated in spheroids, particularly EGFR in PEO1. Furthermore, the 3D culture modulated the response to carboplatin, with an increased expression of drug resistance-associated proteins, including NDUF family members in all spheroid models. These findings underscore how culture dimensionality influences both the molecular landscape and the chemotherapeutic response of HGSOC cells and highlights candidate targets for overcoming carboplatin resistance.

470Works
2Papers
3Collaborators
NeoplasmsCell Line, TumorLung NeoplasmsOvarian NeoplasmsCarcinoma, Non-Small-Cell LungPancreatic NeoplasmsColorectal Neoplasms

Positions

2023–

Co-Director DDU and Professor of Molecular Cancer Pharmacology

The Institute of Cancer Research and The Royal Marsden NHS Foundation Trust · Drug Development Unit

2018–

NIHR Professor of Molecular Cancer Pharmacology & Honorary Consultant in Medical Oncology

The Institute of Cancer Research and The Royal Marsden

2013–

CR-UK Reader in Molecular Cancer Pharmacology and Hon. Consultant in Medical Oncology

The Institute of Cancer Research and The Royal Marsden · Divisions of Cancer Therapeutics and Clinical Studies, Drug Development Unit

2007–

CR-UK Senior Lecturer and Hon. Consultant in Medical Oncology

The Institute of Cancer Research and The Royal Marsden · Divisions of Cancer Therapeutics and Clinical Studies, Drug Development Unit

2003–

SpR in Medical Oncology

The Royal Marsden · Medicine

1999–

Clinical Research Fellow

The Institute of Cancer Research · Cancer Therapeutics

1998–

Senior House Officer

Mount Vernon Hospital/University College Hospital · Medicine

Education

2012

FRCP

Royal College of Physicians

2007

CCT

Joint Committee on Higher Medical Training

2005

PhD

The Institute of Cancer Research · Cancer Therapeutics

1999

MRCP

Royal College of Physicians

1994

MD

Bombay University · Medicine

1994

DNB

National Board of Examinations

1990

MBBS (Hons)

University of Calicut

Country

GB

Keywords
Phase I trialsPharmacodynamic biomarkersDrug Resistance