Investigator

Othmane Bouhali

Professor and Director of Research Computing · Hamad bin Khalifa University, Electrical Engineering

OBOthmane Bouhali
Papers(1)
Prediction of cervix …
Collaborators(6)
Rabih HammoudSatheesh PaloorSA YoganathanSouha AouadiTarraf TorfehNoora Al-Hammadi
Institutions(2)
Unknown InstitutionHamad Medical Corpora…

Papers

Prediction of cervix cancer stage and grade from diffusion weighted imaging using EfficientNet

Abstract Purpose. This study aims to introduce an innovative noninvasive method that leverages a single image for both grading and staging prediction. The grade and the stage of cervix cancer (CC) are determined from diffusion-weighted imaging (DWI) in particular apparent diffusion coefficient (ADC) maps using deep convolutional neural networks (DCNN). Methods. datasets composed of 85 patients having annotated tumor stage (I, II, III, and IV), out of this, 66 were with grade (II and III) and the remaining patients with no reported grade were retrospectively collected. The study was IRB approved. For each patient, sagittal and axial slices containing the gross tumor volume (GTV) were extracted from ADC maps. These were computed using the mono exponential model from diffusion weighted images (b-values = 0, 100, 1000) that were acquired prior to radiotherapy treatment. Balanced training sets were created using the Synthetic Minority Oversampling Technique (SMOTE) and fed to the DCNN. EfficientNetB0 and EfficientNetB3 were transferred from the ImageNet application to binary and four-class classification tasks. Five-fold stratified cross validation was performed for the assessment of the networks. Multiple evaluation metrics were computed including the area under the receiver operating characteristic curve (AUC). Comparisons with Resnet50, Xception, and radiomic analysis were performed. Results. for grade prediction, EfficientNetB3 gave the best performance with AUC = 0.924. For stage prediction, EfficientNetB0 was the best with AUC = 0.931. The difference between both models was, however, small and not statistically significant EfficientNetB0-B3 outperformed ResNet50 (AUC = 0.71) and Xception (AUC = 0.89) in stage prediction, and demonstrated comparable results in grade classification, where AUCs of 0.89 and 0.90 were achieved by ResNet50 and Xception, respectively. DCNN outperformed radiomic analysis that gave AUC = 0.67 (grade) and AUC = 0.66 (stage). Conclusion. the prediction of CC grade and stage from ADC maps is feasible by adapting EfficientNet approaches to the medical context.

1638Works
1Papers
6Collaborators

Positions

2024–

Professor and Director of Research Computing

Hamad bin Khalifa University · Electrical Engineering

2017–

Research Professor

Texas A&M University at Qatar · Science

2008–

Director of Research Computing

Texas A&M University at Qatar · Research Computing

2013–

Research Associate Professor

Texas A&M University at Qatar · Science

2010–

Lecturer in Physics

Texas A&M University at Qatar · Science

2004–

Head of the Computing group

Universite Libre de Bruxelles · Inter-Univresity Institute for High Energy Physics

2001–

Postdoctoral in CMS and AMANDA/ICECUBE

Universite Libre de Bruxelles · Particle Physics

2000–

Postdoctoral Researcher

National Institute for Nuclear and HIgh Energy Physics (NIKHEF) · High Energy Physics

Education

1999

PhD

Universite Libre de Bruxelles · Physics

1992

Master

University Abdelmalek Essaadi · Physics

Country

QA

Keywords
High Energy PhysicsMedical PhysicsHigh Performance ComputingNuclear Medicine
Links & IDs
0000-0001-7139-7322My webpage

Scopus: 57220521234

Researcher Id: JXM-3572-2024