Investigator

Debabrata Chakravarti

Professor and associate Chief, Div of Reprod Sci in Med · Northwestern University Feinberg School of Medicine, OB/Gyn

DCDebabrata Chakrav…
Papers(1)
Engineered uterine pr…
Collaborators(1)
J. Brandon Parker
Institutions(1)
Unknown Institution

Papers

Engineered uterine primary myometrial cells with high-mobility group AT-hook 2 overexpression display a leiomyoma-like transcriptional and epigenomic phenotype

To determine if engineered high-mobility group AT-hook 2 (HMGA2) overexpressing uterine primary myometrial cells recapitulate the transcriptional and epigenomic features of HMGA2-subtype leiomyomas. Isolated primary, "normal" myometrial cells from three patients were engineered to overexpress HMGA2 to determine how HMGA2 establishes transcriptomic and epigenomic features of HMGA2-overexpressing leiomyoma. Academic research laboratory. Primary myometrial cells were isolated from normal myometrium obtained from three patients undergoing hysterectomy. Not applicable. Determined genome-wide transcriptomic and epigenomic features of engineered HMGA2-overexpressing uterine primary myometrial cells. Engineered HMGA2-V5-overexpressing primary myometrial cells approximated the HMGA2 expression level observed in HMGA2-overexpression subtype leiomyoma. High-mobility group AT-hook 2-V5 expression resulted in differential expression of 1,612 genes (false discovery rate [FDR] < 0.05) that were found to be enriched in pathways associated with leiomyoma formation, including extracellular matrix organization. Comparative gene expression analysis between HMGA2-V5 engineered primary cells and HMGA2-overexpression subtype leiomyoma revealed significant overlap of differentially expressed genes. Mechanistically, HMGA2-V5 overexpression resulted in 41,323 regions with differential H3K27ac deposition (FDR < 0.05) and 205,605 regions of altered chromatin accessibility (FDR < 0.05). Transcription factor binding site analysis implicated the AP-1 family of transcription factors. High-mobility group AT-hook 2 overexpression induces leiomyoma-like transcriptomic and epigenomic modulations in myometrial cells.

54Works
1Papers
1Collaborators

Positions

2005–

Professor and associate Chief, Div of Reprod Sci in Med

Northwestern University Feinberg School of Medicine · OB/Gyn

1998–

Assistant Professor

University of Pennsylvania · Pharmacology

1993–

Postdoctoral Fellow

Salk Institute for Biological Studies · Gene Expression Laboratory

Education

1992

Ph.D

Yeshiva University Albert Einstein College of Medicine · Developmental and Molecular Biology

Links & IDs
0000-0001-8446-8599

Scopus: 7005243841