Investigator

Charles Matthew Quick

Professor & Vice Chair of Anatomic Pathology · University of Arkansas Medical Center, Pathology

CMQCharles Matthew Q…
Papers(2)
Giant Cell Tumor of t…Integrated mutational…
Collaborators(10)
Eliana BignottiEric SiegelGloria S. HuangJoão Martins GamaJoseph SchlessingerJungmin ChoiLudmil B. AlexandrovMari Kyllesø HalleMitchell ClarkNatalia Buza
Institutions(9)
University Of Arkansa…Azienda Socio Sanitar…University of Arkansa…Yale UniversityUnidade Local de Saúd…Yale UniversityKorea UniversityUniversity Of Califor…University of Bergen

Papers

Integrated mutational landscape analysis of poorly differentiated high-grade neuroendocrine carcinoma of the uterine cervix

High-grade neuroendocrine cervical cancers (NETc) are exceedingly rare, highly aggressive tumors. We analyzed 64 NETc tumor samples by whole-exome sequencing (WES). Human papillomavirus DNA was detected in 65.6% (42/64) of the tumors. Recurrent mutations were identified in PIK3CA, KMT2D/MLL2, K-RAS, ARID1A, NOTCH2, and RPL10. The top mutated genes included RB1, ARID1A, PTEN, KMT2D / MLL2, and WDFY3, a gene not yet implicated in NETc. Somatic CNV analysis identified two copy number gains (3q27.1 and 19q13.12) and five copy number losses (1p36.21/5q31.3/6p22.2/9q21.11/11p15.5). Also, gene fusions affecting the ACLY-CRHR1 and PVT1-MYC genes were identified in one of the eight samples subjected to RNA sequencing. To resolve evolutionary history, multiregion WES in NETc admixed with adenocarcinoma cells was performed (i.e., mixed-NETc). Phylogenetic analysis of mixed-NETc demonstrated that adenocarcinoma and neuroendocrine elements derive from a common precursor with mutations typical of adenocarcinomas. Over one-third (22/64) of NETc demonstrated a mutator phenotype of C > T at CpG consistent with deficiencies in MBD4 , a member of the base excision repair (BER) pathway. Mutations in the PI3K/AMPK pathways were identified in 49/64 samples. We used two patient-derived-xenografts (PDX) (i.e., NET19 and NET21) to evaluate the activity of pan-HER (afatinib), PIK3CA (copanlisib), and ATR (elimusertib) inhibitors, alone and in combination. PDXs harboring alterations in the ERBB2/PI3K/AKT/mTOR/ATR pathway were sensitive to afatinib, copanlisib, and elimusertib ( P < 0.001 vs. controls). However, combinations of copanlisib/afatinib and copanlisib/elimusertib were significantly more effective in controlling NETc tumor growth. These findings define the genetic landscape of NETc and suggest that a large subset of these highly lethal malignancies might benefit from existing targeted therapies.

2Works
2Papers
14Collaborators
Uterine NeoplasmsGiant Cell TumorsDiagnosis, DifferentialUterine Cervical NeoplasmsNeuroendocrine TumorsAdenocarcinomaCarcinoma, Neuroendocrine

Positions

2011–

Professor & Vice Chair of Anatomic Pathology

University of Arkansas Medical Center · Pathology